Update binder links, include 2i2c and BIDS, remove CurveNote#62
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Update binder links, include 2i2c and BIDS, remove CurveNote#62
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postBuild script failed for validator CI at https://github.com/GenericMappingTools/try-gmt/actions/runs/20699087176/job/59418681407#step:6:3453: > [21/23] RUN ./postBuild:
0.387 gmt: symbol lookup error: /srv/conda/envs/notebook/bin/../lib/./libgdal.so.38: undefined symbol: sqlite3_total_changes64
0.413 gmt: symbol lookup error: /srv/conda/envs/notebook/bin/../lib/./libgdal.so.38: undefined symbol: sqlite3_total_changes64
0.439 gmt: symbol lookup error: /srv/conda/envs/notebook/bin/../lib/./libgdal.so.38: undefined symbol: sqlite3_total_changes64
0.464 gmt: symbol lookup error: /srv/conda/envs/notebook/bin/../lib/./libgdal.so.38: undefined symbol: sqlite3_total_changes64
0.490 gmt: symbol lookup error: /srv/conda/envs/notebook/bin/../lib/./libgdal.so.38: undefined symbol: sqlite3_total_changes64
0.517 gmt: symbol lookup error: /srv/conda/envs/notebook/bin/../lib/./libgdal.so.38: undefined symbol: sqlite3_total_changes64
0.542 gmt: symbol lookup error: /srv/conda/envs/notebook/bin/../lib/./libgdal.so.38: undefined symbol: sqlite3_total_changes64
0.567 gmt: symbol lookup error: /srv/conda/envs/notebook/bin/../lib/./libgdal.so.38: undefined symbol: sqlite3_total_changes64
0.593 gmt: symbol lookup error: /srv/conda/envs/notebook/bin/../lib/./libgdal.so.38: undefined symbol: sqlite3_total_changes64
0.617 gmt: symbol lookup error: /srv/conda/envs/notebook/bin/../lib/./libgdal.so.38: undefined symbol: sqlite3_total_changes64
------
Dockerfile:166
--------------------
164 | # Make sure that postBuild scripts are marked executable before executing them
165 | RUN chmod +x postBuild
166 | >>> RUN ./postBuild
167 |
168 | # Add start script
--------------------
ERROR: failed to build: failed to solve: process "/bin/sh -c ./postBuild" did not complete successfully: exit code: 127
Traceback (most recent call last):
File "/usr/share/miniconda/envs/test/bin/jupyter-repo2docker", line 10, in <module>
sys.exit(main())
~~~~^^
File "/usr/share/miniconda/envs/test/lib/python3.14/site-packages/repo2docker/__main__.py", line 476, in main
r2d.start()
~~~~~~~~~^^
File "/usr/share/miniconda/envs/test/lib/python3.14/site-packages/repo2docker/app.py", line 843, in start
self.build()
~~~~~~~~~~^^
File "/usr/share/miniconda/envs/test/lib/python3.14/site-packages/repo2docker/app.py", line 806, in build
for l in picked_buildpack.build(
~~~~~~~~~~~~~~~~~~~~~~^
docker_client,
^^^^^^^^^^^^^^
...<6 lines>...
platform=self.platform,
^^^^^^^^^^^^^^^^^^^^^^^
):
^
File "/usr/share/miniconda/envs/test/lib/python3.14/site-packages/repo2docker/buildpacks/base.py", line 671, in build
yield from client.build(**build_kwargs)
File "/usr/share/miniconda/envs/test/lib/python3.14/site-packages/repo2docker/docker.py", line 155, in build
yield from execute_cmd(args, True)
File "/usr/share/miniconda/envs/test/lib/python3.14/site-packages/repo2docker/utils.py", line 76, in execute_cmd
raise subprocess.CalledProcessError(ret, cmd)
subprocess.CalledProcessError: Command '['docker', 'buildx', 'build', '--progress', 'plain', '--build-arg', 'NB_USER=runner', '--build-arg', 'NB_UID=1001', '--tag', 'r2dhttps-3a-2f-2fgithub-2ecom-2fgenericmappingtools-2ftry-2dgmt4830243', '--platform', 'linux/amd64', '/tmp/tmpe8fipwlh']' returned non-zero exit status 1.Similar issue encountered before at GenericMappingTools/pygmt#3789. Maybe need to update the CI a bit. |
Bumps [actions/checkout](https://github.com/actions/checkout) from 2 to 6.0.1. - [Release notes](https://github.com/actions/checkout/releases) - [Commits](actions/checkout@v2...v6.0.1) Bumps [conda-incubator/setup-miniconda](https://github.com/conda-incubator/setup-miniconda) from 2 to 3.2.0. - [Release notes](https://github.com/conda-incubator/setup-miniconda/releases) - [Changelog](https://github.com/conda-incubator/setup-miniconda/blob/main/CHANGELOG.md) - [Commits](conda-incubator/setup-miniconda@v2...v3.2.0) Also remove defaults channel, set solver to libmamba and use miniforge instead of miniconda.
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Validator still fails, but let's just merge to fix the README.md issue, and revisit the error later if it pops up again. |
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Ah nope, Binder actually did fail with that |
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Xref https://mybinder.readthedocs.io/en/latest/about/federation.html#members-of-the-binderhub-federation
Closes #61