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16 changes: 12 additions & 4 deletions .github/workflows/prepare_test_data.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -4,10 +4,10 @@ on:
schedule:
- cron: "0 0 1 * *" # run once a month to prevent artifact expiration
workflow_dispatch:
# uncomment and adjust the branch name if you need to add new datasets to the artifact
# push:
# branches:
# - main
# uncomment and adjust the branch name if you need to add new datasets to the artifact
push:
branches:
- fix/macsima-cycle-parsing

jobs:
prepare-data:
Expand Down Expand Up @@ -57,6 +57,14 @@ jobs:
# Spatial Genomics seqFISH v2
curl -O https://s3.embl.de/spatialdata/raw_data/seqfish-2-test-dataset.zip

# -------
# MACSima OMAP datasets are licensed as CC BY 4.0
# OMAP23 for current format
curl https://zenodo.org/api/records/14008816/files-archive -o OMAP23.zip

# OMAP10 for legacy format
curl https://zenodo.org/api/records/7875938/files-archive -o OMAP10.zip

- name: Unzip files
run: |
cd ./data
Expand Down
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