I am noticing that the historical pairing file that we instated in 2020 /juno/work/tempo/voyager/historical_pairing_file.tsv differs from the sample_pairing.txt file for 66 pairs. Maybe for a few we ran beaglecli tempo-mpgen override but this option was seldom used by me and probably doesn't account for 66 pairs.
here is the reference to a different historical pairing file used in the pairing operation:
https://github.com/mskcc/beagle/blob/master/runner/operator/tempo_mpgen_operator/tempo_mpgen_operator.py#L27
how are changes to this file tracked? and how come the previous pairing was "forgotten" ?