From 4b0c3db5197cbca831725ce93df519721842ba52 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Tue, 2 Dec 2025 07:11:49 +0000
Subject: [PATCH 01/18] Bump actions/checkout from 4 to 6 (#8649)
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

Bumps [actions/checkout](https://github.com/actions/checkout) from 4 to
6.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/actions/checkout/releases">actions/checkout's
releases</a>.</em></p>
<blockquote>
<h2>v6.0.0</h2>
<h2>What's Changed</h2>
<ul>
<li>Update README to include Node.js 24 support details and requirements
by <a href="https://github.com/salmanmkc"><code>@​salmanmkc</code></a>
in <a
href="https://redirect.github.com/actions/checkout/pull/2248">actions/checkout#2248</a></li>
<li>Persist creds to a separate file by <a
href="https://github.com/ericsciple"><code>@​ericsciple</code></a> in <a
href="https://redirect.github.com/actions/checkout/pull/2286">actions/checkout#2286</a></li>
<li>v6-beta by <a
href="https://github.com/ericsciple"><code>@​ericsciple</code></a> in <a
href="https://redirect.github.com/actions/checkout/pull/2298">actions/checkout#2298</a></li>
<li>update readme/changelog for v6 by <a
href="https://github.com/ericsciple"><code>@​ericsciple</code></a> in <a
href="https://redirect.github.com/actions/checkout/pull/2311">actions/checkout#2311</a></li>
</ul>
<p><strong>Full Changelog</strong>: <a
href="https://github.com/actions/checkout/compare/v5.0.0...v6.0.0">https://github.com/actions/checkout/compare/v5.0.0...v6.0.0</a></p>
<h2>v6-beta</h2>
<h2>What's Changed</h2>
<p>Updated persist-credentials to store the credentials under
<code>$RUNNER_TEMP</code> instead of directly in the local git
config.</p>
<p>This requires a minimum Actions Runner version of <a
href="https://github.com/actions/runner/releases/tag/v2.329.0">v2.329.0</a>
to access the persisted credentials for <a
href="https://docs.github.com/en/actions/tutorials/use-containerized-services/create-a-docker-container-action">Docker
container action</a> scenarios.</p>
<h2>v5.0.1</h2>
<h2>What's Changed</h2>
<ul>
<li>Port v6 cleanup to v5 by <a
href="https://github.com/ericsciple"><code>@​ericsciple</code></a> in <a
href="https://redirect.github.com/actions/checkout/pull/2301">actions/checkout#2301</a></li>
</ul>
<p><strong>Full Changelog</strong>: <a
href="https://github.com/actions/checkout/compare/v5...v5.0.1">https://github.com/actions/checkout/compare/v5...v5.0.1</a></p>
<h2>v5.0.0</h2>
<h2>What's Changed</h2>
<ul>
<li>Update actions checkout to use node 24 by <a
href="https://github.com/salmanmkc"><code>@​salmanmkc</code></a> in <a
href="https://redirect.github.com/actions/checkout/pull/2226">actions/checkout#2226</a></li>
<li>Prepare v5.0.0 release by <a
href="https://github.com/salmanmkc"><code>@​salmanmkc</code></a> in <a
href="https://redirect.github.com/actions/checkout/pull/2238">actions/checkout#2238</a></li>
</ul>
<h2>⚠️ Minimum Compatible Runner Version</h2>
<p><strong>v2.327.1</strong><br />
<a
href="https://github.com/actions/runner/releases/tag/v2.327.1">Release
Notes</a></p>
<p>Make sure your runner is updated to this version or newer to use this
release.</p>
<p><strong>Full Changelog</strong>: <a
href="https://github.com/actions/checkout/compare/v4...v5.0.0">https://github.com/actions/checkout/compare/v4...v5.0.0</a></p>
<h2>v4.3.1</h2>
<h2>What's Changed</h2>
<ul>
<li>Port v6 cleanup to v4 by <a
href="https://github.com/ericsciple"><code>@​ericsciple</code></a> in <a
href="https://redirect.github.com/actions/checkout/pull/2305">actions/checkout#2305</a></li>
</ul>
<p><strong>Full Changelog</strong>: <a
href="https://github.com/actions/checkout/compare/v4...v4.3.1">https://github.com/actions/checkout/compare/v4...v4.3.1</a></p>
<h2>v4.3.0</h2>
<h2>What's Changed</h2>
<ul>
<li>docs: update README.md by <a
href="https://github.com/motss"><code>@​motss</code></a> in <a
href="https://redirect.github.com/actions/checkout/pull/1971">actions/checkout#1971</a></li>
<li>Add internal repos for checking out multiple repositories by <a
href="https://github.com/mouismail"><code>@​mouismail</code></a> in <a
href="https://redirect.github.com/actions/checkout/pull/1977">actions/checkout#1977</a></li>
<li>Documentation update - add recommended permissions to Readme by <a
href="https://github.com/benwells"><code>@​benwells</code></a> in <a
href="https://redirect.github.com/actions/checkout/pull/2043">actions/checkout#2043</a></li>
</ul>
<!-- raw HTML omitted -->
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Changelog</summary>
<p><em>Sourced from <a
href="https://github.com/actions/checkout/blob/main/CHANGELOG.md">actions/checkout's
changelog</a>.</em></p>
<blockquote>
<h1>Changelog</h1>
<h2>V6.0.0</h2>
<ul>
<li>Persist creds to a separate file by <a
href="https://github.com/ericsciple"><code>@​ericsciple</code></a> in <a
href="https://redirect.github.com/actions/checkout/pull/2286">actions/checkout#2286</a></li>
<li>Update README to include Node.js 24 support details and requirements
by <a href="https://github.com/salmanmkc"><code>@​salmanmkc</code></a>
in <a
href="https://redirect.github.com/actions/checkout/pull/2248">actions/checkout#2248</a></li>
</ul>
<h2>V5.0.1</h2>
<ul>
<li>Port v6 cleanup to v5 by <a
href="https://github.com/ericsciple"><code>@​ericsciple</code></a> in <a
href="https://redirect.github.com/actions/checkout/pull/2301">actions/checkout#2301</a></li>
</ul>
<h2>V5.0.0</h2>
<ul>
<li>Update actions checkout to use node 24 by <a
href="https://github.com/salmanmkc"><code>@​salmanmkc</code></a> in <a
href="https://redirect.github.com/actions/checkout/pull/2226">actions/checkout#2226</a></li>
</ul>
<h2>V4.3.1</h2>
<ul>
<li>Port v6 cleanup to v4 by <a
href="https://github.com/ericsciple"><code>@​ericsciple</code></a> in <a
href="https://redirect.github.com/actions/checkout/pull/2305">actions/checkout#2305</a></li>
</ul>
<h2>V4.3.0</h2>
<ul>
<li>docs: update README.md by <a
href="https://github.com/motss"><code>@​motss</code></a> in <a
href="https://redirect.github.com/actions/checkout/pull/1971">actions/checkout#1971</a></li>
<li>Add internal repos for checking out multiple repositories by <a
href="https://github.com/mouismail"><code>@​mouismail</code></a> in <a
href="https://redirect.github.com/actions/checkout/pull/1977">actions/checkout#1977</a></li>
<li>Documentation update - add recommended permissions to Readme by <a
href="https://github.com/benwells"><code>@​benwells</code></a> in <a
href="https://redirect.github.com/actions/checkout/pull/2043">actions/checkout#2043</a></li>
<li>Adjust positioning of user email note and permissions heading by <a
href="https://github.com/joshmgross"><code>@​joshmgross</code></a> in <a
href="https://redirect.github.com/actions/checkout/pull/2044">actions/checkout#2044</a></li>
<li>Update README.md by <a
href="https://github.com/nebuk89"><code>@​nebuk89</code></a> in <a
href="https://redirect.github.com/actions/checkout/pull/2194">actions/checkout#2194</a></li>
<li>Update CODEOWNERS for actions by <a
href="https://github.com/TingluoHuang"><code>@​TingluoHuang</code></a>
in <a
href="https://redirect.github.com/actions/checkout/pull/2224">actions/checkout#2224</a></li>
<li>Update package dependencies by <a
href="https://github.com/salmanmkc"><code>@​salmanmkc</code></a> in <a
href="https://redirect.github.com/actions/checkout/pull/2236">actions/checkout#2236</a></li>
</ul>
<h2>v4.2.2</h2>
<ul>
<li><code>url-helper.ts</code> now leverages well-known environment
variables by <a href="https://github.com/jww3"><code>@​jww3</code></a>
in <a
href="https://redirect.github.com/actions/checkout/pull/1941">actions/checkout#1941</a></li>
<li>Expand unit test coverage for <code>isGhes</code> by <a
href="https://github.com/jww3"><code>@​jww3</code></a> in <a
href="https://redirect.github.com/actions/checkout/pull/1946">actions/checkout#1946</a></li>
</ul>
<h2>v4.2.1</h2>
<ul>
<li>Check out other refs/* by commit if provided, fall back to ref by <a
href="https://github.com/orhantoy"><code>@​orhantoy</code></a> in <a
href="https://redirect.github.com/actions/checkout/pull/1924">actions/checkout#1924</a></li>
</ul>
<h2>v4.2.0</h2>
<ul>
<li>Add Ref and Commit outputs by <a
href="https://github.com/lucacome"><code>@​lucacome</code></a> in <a
href="https://redirect.github.com/actions/checkout/pull/1180">actions/checkout#1180</a></li>
<li>Dependency updates by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a>- <a
href="https://redirect.github.com/actions/checkout/pull/1777">actions/checkout#1777</a>,
<a
href="https://redirect.github.com/actions/checkout/pull/1872">actions/checkout#1872</a></li>
</ul>
<h2>v4.1.7</h2>
<ul>
<li>Bump the minor-npm-dependencies group across 1 directory with 4
updates by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/actions/checkout/pull/1739">actions/checkout#1739</a></li>
<li>Bump actions/checkout from 3 to 4 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/actions/checkout/pull/1697">actions/checkout#1697</a></li>
<li>Check out other refs/* by commit by <a
href="https://github.com/orhantoy"><code>@​orhantoy</code></a> in <a
href="https://redirect.github.com/actions/checkout/pull/1774">actions/checkout#1774</a></li>
<li>Pin actions/checkout's own workflows to a known, good, stable
version. by <a href="https://github.com/jww3"><code>@​jww3</code></a> in
<a
href="https://redirect.github.com/actions/checkout/pull/1776">actions/checkout#1776</a></li>
</ul>
<h2>v4.1.6</h2>
<ul>
<li>Check platform to set archive extension appropriately by <a
href="https://github.com/cory-miller"><code>@​cory-miller</code></a> in
<a
href="https://redirect.github.com/actions/checkout/pull/1732">actions/checkout#1732</a></li>
</ul>
<h2>v4.1.5</h2>
<ul>
<li>Update NPM dependencies by <a
href="https://github.com/cory-miller"><code>@​cory-miller</code></a> in
<a
href="https://redirect.github.com/actions/checkout/pull/1703">actions/checkout#1703</a></li>
<li>Bump github/codeql-action from 2 to 3 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/actions/checkout/pull/1694">actions/checkout#1694</a></li>
<li>Bump actions/setup-node from 1 to 4 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/actions/checkout/pull/1696">actions/checkout#1696</a></li>
<li>Bump actions/upload-artifact from 2 to 4 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/actions/checkout/pull/1695">actions/checkout#1695</a></li>
</ul>
<!-- raw HTML omitted -->
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/actions/checkout/commit/1af3b93b6815bc44a9784bd300feb67ff0d1eeb3"><code>1af3b93</code></a>
update readme/changelog for v6 (<a
href="https://redirect.github.com/actions/checkout/issues/2311">#2311</a>)</li>
<li><a
href="https://github.com/actions/checkout/commit/71cf2267d89c5cb81562390fa70a37fa40b1305e"><code>71cf226</code></a>
v6-beta (<a
href="https://redirect.github.com/actions/checkout/issues/2298">#2298</a>)</li>
<li><a
href="https://github.com/actions/checkout/commit/069c6959146423d11cd0184e6accf28f9d45f06e"><code>069c695</code></a>
Persist creds to a separate file (<a
href="https://redirect.github.com/actions/checkout/issues/2286">#2286</a>)</li>
<li><a
href="https://github.com/actions/checkout/commit/ff7abcd0c3c05ccf6adc123a8cd1fd4fb30fb493"><code>ff7abcd</code></a>
Update README to include Node.js 24 support details and requirements (<a
href="https://redirect.github.com/actions/checkout/issues/2248">#2248</a>)</li>
<li><a
href="https://github.com/actions/checkout/commit/08c6903cd8c0fde910a37f88322edcfb5dd907a8"><code>08c6903</code></a>
Prepare v5.0.0 release (<a
href="https://redirect.github.com/actions/checkout/issues/2238">#2238</a>)</li>
<li><a
href="https://github.com/actions/checkout/commit/9f265659d3bb64ab1440b03b12f4d47a24320917"><code>9f26565</code></a>
Update actions checkout to use node 24 (<a
href="https://redirect.github.com/actions/checkout/issues/2226">#2226</a>)</li>
<li>See full diff in <a
href="https://github.com/actions/checkout/compare/v4...v6">compare
view</a></li>
</ul>
</details>
<br />

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Dependabot will resolve any conflicts with this PR as long as you don't
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<details>
<summary>Dependabot commands and options</summary>
<br />

You can trigger Dependabot actions by commenting on this PR:
- `@dependabot rebase` will rebase this PR
- `@dependabot recreate` will recreate this PR, overwriting any edits
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</details>

---------

Signed-off-by: dependabot[bot] <support@github.com>
Signed-off-by: Yun Liu <yunl@nvidia.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Yun Liu <yunl@nvidia.com>
Signed-off-by: Mohammad Amanour Rahman <amanourrahman@gmail.com>
---
 .github/workflows/codeql-analysis.yml | 2 +-
 .github/workflows/conda.yml           | 2 +-
 .github/workflows/cron-ngc-bundle.yml | 2 +-
 .github/workflows/cron.yml            | 8 ++++----
 .github/workflows/docker.yml          | 4 ++--
 .github/workflows/integration.yml     | 4 ++--
 .github/workflows/pythonapp-gpu.yml   | 2 +-
 .github/workflows/pythonapp-min.yml   | 6 +++---
 .github/workflows/pythonapp.yml       | 8 ++++----
 .github/workflows/release.yml         | 6 +++---
 .github/workflows/setupapp.yml        | 6 +++---
 .github/workflows/weekly-preview.yml  | 4 ++--
 12 files changed, 27 insertions(+), 27 deletions(-)

diff --git a/.github/workflows/codeql-analysis.yml b/.github/workflows/codeql-analysis.yml
index 10ca752a5e..5166517cbe 100644
--- a/.github/workflows/codeql-analysis.yml
+++ b/.github/workflows/codeql-analysis.yml
@@ -38,7 +38,7 @@ jobs:
 
     steps:
     - name: Checkout repository
-      uses: actions/checkout@v5
+      uses: actions/checkout@v6
 
     # Initializes the CodeQL tools for scanning.
     - name: Initialize CodeQL
diff --git a/.github/workflows/conda.yml b/.github/workflows/conda.yml
index ec753adace..6103e30ae6 100644
--- a/.github/workflows/conda.yml
+++ b/.github/workflows/conda.yml
@@ -32,7 +32,7 @@ jobs:
         minimum-size: 8GB
         maximum-size: 16GB
         disk-root: "D:"
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
     - name: Clean up disk space
       run: |
         find /opt/hostedtoolcache/* -maxdepth 0 ! -name 'Python' -exec rm -rf {} \;
diff --git a/.github/workflows/cron-ngc-bundle.yml b/.github/workflows/cron-ngc-bundle.yml
index c9bebc7bff..3bdebd5730 100644
--- a/.github/workflows/cron-ngc-bundle.yml
+++ b/.github/workflows/cron-ngc-bundle.yml
@@ -17,7 +17,7 @@ jobs:
     if: github.repository == 'Project-MONAI/MONAI'
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
     - name: Set up Python 3.9
       uses: actions/setup-python@v6
       with:
diff --git a/.github/workflows/cron.yml b/.github/workflows/cron.yml
index f33faf8c1a..dca48dd9c8 100644
--- a/.github/workflows/cron.yml
+++ b/.github/workflows/cron.yml
@@ -32,7 +32,7 @@ jobs:
       options: "--gpus all"
     runs-on: [self-hosted, linux, x64, common]
     steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
     - name: apt install
       run: |
         apt-get update
@@ -82,7 +82,7 @@ jobs:
       options: "--gpus all"
     runs-on: [self-hosted, linux, x64, integration]
     steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
     - name: Install APT dependencies
       run: |
         apt-get update
@@ -131,7 +131,7 @@ jobs:
       options: "--gpus all"
     runs-on: [self-hosted, linux, x64, integration]
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
         with:
           fetch-depth: 0
       - name: Install the dependencies
@@ -233,7 +233,7 @@ jobs:
       options: "--gpus all --ipc=host"
     runs-on: [self-hosted, linux, x64, integration]
     steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
     - name: Install MONAI
       id: monai-install
       run: |
diff --git a/.github/workflows/docker.yml b/.github/workflows/docker.yml
index 4741dca858..25cffc09c3 100644
--- a/.github/workflows/docker.yml
+++ b/.github/workflows/docker.yml
@@ -21,7 +21,7 @@ jobs:
     if: ${{ false }}  # disable docker build job  project-monai/monai#7450
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
         # full history so that we can git describe
         with:
           ref: dev
@@ -53,7 +53,7 @@ jobs:
     needs: versioning_dev
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
       with:
         ref: dev
     - name: Download version
diff --git a/.github/workflows/integration.yml b/.github/workflows/integration.yml
index 597f59f767..54b5a3f381 100644
--- a/.github/workflows/integration.yml
+++ b/.github/workflows/integration.yml
@@ -13,7 +13,7 @@ jobs:
     runs-on: [self-hosted, linux, x64, command]
     steps:
     # checkout the pull request branch
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
       with:
         token: ${{ secrets.PR_MAINTAIN }}
         repository: ${{ github.event.client_payload.pull_request.head.repo.full_name }}
@@ -89,7 +89,7 @@ jobs:
     runs-on: [self-hosted, linux, x64, command1]
     steps:
     # checkout the pull request branch
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
       with:
         token: ${{ secrets.PR_MAINTAIN }}
         repository: ${{ github.event.client_payload.pull_request.head.repo.full_name }}
diff --git a/.github/workflows/pythonapp-gpu.yml b/.github/workflows/pythonapp-gpu.yml
index 347b49bba3..036ef50f41 100644
--- a/.github/workflows/pythonapp-gpu.yml
+++ b/.github/workflows/pythonapp-gpu.yml
@@ -44,7 +44,7 @@ jobs:
       options: --gpus all --env NVIDIA_DISABLE_REQUIRE=true  # workaround for unsatisfied condition: cuda>=11.6
     runs-on: [self-hosted, linux, x64, common]
     steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
     - name: apt install
       if: github.event.pull_request.merged != true
       run: |
diff --git a/.github/workflows/pythonapp-min.yml b/.github/workflows/pythonapp-min.yml
index 34a328672a..844d8c844e 100644
--- a/.github/workflows/pythonapp-min.yml
+++ b/.github/workflows/pythonapp-min.yml
@@ -30,7 +30,7 @@ jobs:
         os: [windows-latest, macOS-latest, ubuntu-latest]
     timeout-minutes: 40
     steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
     - name: Set up Python 3.9
       uses: actions/setup-python@v6
       with:
@@ -79,7 +79,7 @@ jobs:
         python-version: ['3.9', '3.10', '3.11', '3.12']
     timeout-minutes: 40
     steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
     - name: Set up Python ${{ matrix.python-version }}
       uses: actions/setup-python@v6
       with:
@@ -128,7 +128,7 @@ jobs:
         pytorch-version: ['2.5.1', '2.6.0', '2.7.1', '2.8.0']
     timeout-minutes: 40
     steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
     - name: Set up Python 3.9
       uses: actions/setup-python@v6
       with:
diff --git a/.github/workflows/pythonapp.yml b/.github/workflows/pythonapp.yml
index ddc42b8975..fca9136763 100644
--- a/.github/workflows/pythonapp.yml
+++ b/.github/workflows/pythonapp.yml
@@ -28,7 +28,7 @@ jobs:
       matrix:
         opt: ["codeformat", "pytype", "mypy"]
     steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
     - name: Set up Python 3.9
       uses: actions/setup-python@v6
       with:
@@ -70,7 +70,7 @@ jobs:
         minimum-size: 8GB
         maximum-size: 16GB
         disk-root: "D:"
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
     - name: Set up Python 3.9
       uses: actions/setup-python@v6
       with:
@@ -129,7 +129,7 @@ jobs:
       QUICKTEST: True
       shell: bash
     steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
       with:
         fetch-depth: 0
     - name: Set up Python 3.9
@@ -213,7 +213,7 @@ jobs:
   build-docs:
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
     - name: Set up Python 3.9
       uses: actions/setup-python@v6
       with:
diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml
index 3a8e8ffdf6..fe1f8ea411 100644
--- a/.github/workflows/release.yml
+++ b/.github/workflows/release.yml
@@ -15,7 +15,7 @@ jobs:
       matrix:
         python-version: ['3.9', '3.10', '3.11']
     steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
       with:
         fetch-depth: 0
     - name: Set up Python ${{ matrix.python-version }}
@@ -93,7 +93,7 @@ jobs:
     needs: packaging
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
         # full history so that we can git describe
         with:
           fetch-depth: 0
@@ -125,7 +125,7 @@ jobs:
     needs: versioning
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
       - name: Download version
         uses: actions/download-artifact@v6
         with:
diff --git a/.github/workflows/setupapp.yml b/.github/workflows/setupapp.yml
index acd72eaf6f..46e02592df 100644
--- a/.github/workflows/setupapp.yml
+++ b/.github/workflows/setupapp.yml
@@ -28,7 +28,7 @@ jobs:
       options: --gpus all
     runs-on: [self-hosted, linux, x64, integration]
     steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
     - name: cache weekly timestamp
       id: pip-cache
       run: |
@@ -83,7 +83,7 @@ jobs:
       matrix:
         python-version: ['3.9', '3.10', '3.11']
     steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
       with:
         fetch-depth: 0
     - name: Set up Python ${{ matrix.python-version }}
@@ -159,7 +159,7 @@ jobs:
         python -c 'import monai; monai.config.print_config()'
     - name: Get the test cases (dev branch only)
       if: github.ref == 'refs/heads/dev'
-      uses: actions/checkout@v5
+      uses: actions/checkout@v6
       with:
         ref: dev
     - name: Quick test installed (dev branch only)
diff --git a/.github/workflows/weekly-preview.yml b/.github/workflows/weekly-preview.yml
index 93d6f67f09..44618b58d8 100644
--- a/.github/workflows/weekly-preview.yml
+++ b/.github/workflows/weekly-preview.yml
@@ -11,7 +11,7 @@ jobs:
       matrix:
         opt: ["codeformat", "pytype", "mypy"]
     steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
     - name: Set up Python 3.9
       uses: actions/setup-python@v6
       with:
@@ -42,7 +42,7 @@ jobs:
     if: github.repository == 'Project-MONAI/MONAI'
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
       with:
         ref: dev
         fetch-depth: 0

From 0509ef2a6ba12ded9bf626c69468ce2ab40fbddd Mon Sep 17 00:00:00 2001
From: Mohammad Amanour Rahman <amanourrahman@gmail.com>
Date: Mon, 22 Dec 2025 23:10:50 +0600
Subject: [PATCH 02/18] Fix network_type docstring formatting in PerceptualLoss

Signed-off-by: Mohammad Amanour Rahman <amanourrahman@gmail.com>
---
 monai/losses/perceptual.py | 8 +++++---
 1 file changed, 5 insertions(+), 3 deletions(-)

diff --git a/monai/losses/perceptual.py b/monai/losses/perceptual.py
index 2ae03bc8dc..3c9e22c36a 100644
--- a/monai/losses/perceptual.py
+++ b/monai/losses/perceptual.py
@@ -49,9 +49,11 @@ class PerceptualLoss(nn.Module):
 
     Args:
         spatial_dims: number of spatial dimensions.
-        network_type: {``"alex"``, ``"vgg"``, ``"squeeze"``, ``"radimagenet_resnet50"``,
-        ``"medicalnet_resnet10_23datasets"``, ``"medicalnet_resnet50_23datasets"``, ``"resnet50"``}
-            Specifies the network architecture to use. Defaults to ``"alex"``.
+        network_type: str or PercetualNetworkType Specifies the network architecture to use. Supported values are defined in
+            ``PercetualNetworkType`` (e.g., ``"alex"``, ``"vgg"``, ``"squeeze"``,
+            ``"radimagenet_resnet50"``, ``"medicalnet_resnet10_23datasets"``,
+            ``"medicalnet_resnet50_23datasets"``, ``"resnet50"``).
+            Defaults to ``PercetualNetworkType.alex``.
         is_fake_3d: if True use 2.5D approach for a 3D perceptual loss.
         fake_3d_ratio: ratio of how many slices per axis are used in the 2.5D approach.
         cache_dir: path to cache directory to save the pretrained network weights.

From c0b0bdb0d5a3a74490a899a44d8abc58b8e7c886 Mon Sep 17 00:00:00 2001
From: Mohammad Amanour Rahman <amanourrahman@gmail.com>
Date: Mon, 22 Dec 2025 23:33:53 +0600
Subject: [PATCH 03/18] DCO Remediation Commit for Mohammad Amanour Rahman
 <amanourrahman@gmail.com>

I, Mohammad Amanour Rahman <amanourrahman@gmail.com>, hereby add my Signed-off-by to this commit.

Signed-off-by: Mohammad Amanour Rahman <amanourrahman@gmail.com>
---
 monai/losses/perceptual.py | 16 ++++++++++------
 1 file changed, 10 insertions(+), 6 deletions(-)

diff --git a/monai/losses/perceptual.py b/monai/losses/perceptual.py
index 3c9e22c36a..219f35c7dd 100644
--- a/monai/losses/perceptual.py
+++ b/monai/losses/perceptual.py
@@ -23,7 +23,7 @@
 torchvision, _ = optional_import("torchvision")
 
 
-class PercetualNetworkType(StrEnum):
+class PerceptualNetworkType(StrEnum):
     alex = "alex"
     vgg = "vgg"
     squeeze = "squeeze"
@@ -49,11 +49,15 @@ class PerceptualLoss(nn.Module):
 
     Args:
         spatial_dims: number of spatial dimensions.
-        network_type: str or PercetualNetworkType Specifies the network architecture to use. Supported values are defined in
-            ``PercetualNetworkType`` (e.g., ``"alex"``, ``"vgg"``, ``"squeeze"``,
-            ``"radimagenet_resnet50"``, ``"medicalnet_resnet10_23datasets"``,
-            ``"medicalnet_resnet50_23datasets"``, ``"resnet50"``).
-            Defaults to ``PercetualNetworkType.alex``.
+        network_type : str
+            One of:
+            - "alex"
+            - "vgg"
+            - "squeeze"
+            - "radimagenet_resnet50"
+            - "medicalnet_resnet10_23datasets"
+            - "medicalnet_resnet50_23datasets"
+            - "resnet50"
         is_fake_3d: if True use 2.5D approach for a 3D perceptual loss.
         fake_3d_ratio: ratio of how many slices per axis are used in the 2.5D approach.
         cache_dir: path to cache directory to save the pretrained network weights.

From 658af7160c9979d7769ea5f71132fe01753ccc09 Mon Sep 17 00:00:00 2001
From: Mohammad Amanour Rahman <amanourrahman@gmail.com>
Date: Mon, 22 Dec 2025 23:35:40 +0600
Subject: [PATCH 04/18] DCO Remediation Commit for Mohammad Amanour Rahman
 <amanourrahman@gmail.com>

I, Mohammad Amanour Rahman <amanourrahman@gmail.com>, hereby add my Signed-off-by to this commit.

Signed-off-by: Mohammad Amanour Rahman <amanourrahman@gmail.com>

From 2563a3c051317d358d260c1f0ab764ef2d8af270 Mon Sep 17 00:00:00 2001
From: Mohammad Amanour Rahman <amanourrahman@gmail.com>
Date: Tue, 23 Dec 2025 00:04:10 +0600
Subject: [PATCH 05/18] Fix PerceptualLoss enum references and docstrings

Signed-off-by: Mohammad Amanour Rahman <amanourrahman@gmail.com>
---
 monai/losses/perceptual.py | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/monai/losses/perceptual.py b/monai/losses/perceptual.py
index 219f35c7dd..37d6cd692d 100644
--- a/monai/losses/perceptual.py
+++ b/monai/losses/perceptual.py
@@ -76,7 +76,7 @@ class PerceptualLoss(nn.Module):
     def __init__(
         self,
         spatial_dims: int,
-        network_type: str = PercetualNetworkType.alex,
+        network_type: str = PerceptualNetworkType.alex,
         is_fake_3d: bool = True,
         fake_3d_ratio: float = 0.5,
         cache_dir: str | None = None,
@@ -99,10 +99,10 @@ def __init__(
         if channel_wise and "medicalnet_" not in network_type:
             raise ValueError("Channel-wise loss is only compatible with MedicalNet networks.")
 
-        if network_type.lower() not in list(PercetualNetworkType):
+        if network_type.lower() not in list(PerceptualNetworkType):
             raise ValueError(
                 "Unrecognised criterion entered for Adversarial Loss. Must be one in: %s"
-                % ", ".join(PercetualNetworkType)
+                % ", ".join(PerceptualNetworkType)
             )
 
         if cache_dir:

From d2de10dca8db8c6e56c175de4172fa3263eb65e4 Mon Sep 17 00:00:00 2001
From: Mohammad Amanour Rahman <amanourrahman@gmail.com>
Date: Tue, 23 Dec 2025 00:06:13 +0600
Subject: [PATCH 06/18] DCO Remediation Commit for Mohammad Amanour Rahman
 <amanourrahman@gmail.com>

I, Mohammad Amanour Rahman <amanourrahman@gmail.com>, hereby add my Signed-off-by to this commit: 7ce29a1

Signed-off-by: Mohammad Amanour Rahman <amanourrahman@gmail.com>

From f9c15591ae3b34bc48dbdce1031ec5f627773f78 Mon Sep 17 00:00:00 2001
From: Mohammad Amanour Rahman <amanourrahman@gmail.com>
Date: Tue, 23 Dec 2025 00:06:17 +0600
Subject: [PATCH 07/18] DCO Remediation Commit for Mohammad Amanour Rahman
 <amanourrahman@gmail.com>

I, Mohammad Amanour Rahman <amanourrahman@gmail.com>, hereby add my Signed-off-by to this commit: cc0c951

Signed-off-by: Mohammad Amanour Rahman <amanourrahman@gmail.com>

From 695609c38cd52edde11a07a5817db6ccce5e81dd Mon Sep 17 00:00:00 2001
From: Mohammad Amanour Rahman <amanourrahman@gmail.com>
Date: Tue, 23 Dec 2025 00:07:53 +0600
Subject: [PATCH 08/18] Fix PerceptualLoss enum references and docstrings

Signed-off-by: Mohammad Amanour Rahman <amanourrahman@gmail.com>
---
 monai/losses/perceptual.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/monai/losses/perceptual.py b/monai/losses/perceptual.py
index 37d6cd692d..dca3ec30e2 100644
--- a/monai/losses/perceptual.py
+++ b/monai/losses/perceptual.py
@@ -49,7 +49,7 @@ class PerceptualLoss(nn.Module):
 
     Args:
         spatial_dims: number of spatial dimensions.
-        network_type : str
+        network_type: str | PercetualNetworkType = PercetualNetworkType.alex,
             One of:
             - "alex"
             - "vgg"

From 67ba0fa31f145e5d01471327790da9b90506ea32 Mon Sep 17 00:00:00 2001
From: Mohammad Amanour Rahman <amanourrahman@gmail.com>
Date: Tue, 23 Dec 2025 00:16:53 +0600
Subject: [PATCH 09/18] DCO Remediation Commit for Mohammad Amanour Rahman
 <amanourrahman@gmail.com>

I, Mohammad Amanour Rahman <amanourrahman@gmail.com>, hereby add my Signed-off-by to this commit: 7ce29a1

Signed-off-by: Mohammad Amanour Rahman <amanourrahman@gmail.com>

From 10b5cdabd67df5d71b49aa0e8bacc35f995ec849 Mon Sep 17 00:00:00 2001
From: Mohammad Amanour Rahman <amanourrahman@gmail.com>
Date: Tue, 23 Dec 2025 00:17:00 +0600
Subject: [PATCH 10/18] DCO Remediation Commit for Mohammad Amanour Rahman
 <amanourrahman@gmail.com>

I, Mohammad Amanour Rahman <amanourrahman@gmail.com>, hereby add my Signed-off-by to this commit: cc0c951

Signed-off-by: Mohammad Amanour Rahman <amanourrahman@gmail.com>

From eae8ca5730a518db35fca27db3986fec305ca559 Mon Sep 17 00:00:00 2001
From: Mohammad Amanour Rahman <amanourrahman@gmail.com>
Date: Tue, 23 Dec 2025 00:17:04 +0600
Subject: [PATCH 11/18] DCO Remediation Commit for Mohammad Amanour Rahman
 <amanourrahman@gmail.com>

I, Mohammad Amanour Rahman <amanourrahman@gmail.com>, hereby add my Signed-off-by to this commit: 3e92d74

Signed-off-by: Mohammad Amanour Rahman <amanourrahman@gmail.com>

From 0bad60d0e8876881b37446075b43154f5adcf19b Mon Sep 17 00:00:00 2001
From: Mohammad Amanour Rahman <amanourrahman@gmail.com>
Date: Mon, 22 Dec 2025 23:10:50 +0600
Subject: [PATCH 12/18] Fix network_type docstring formatting in PerceptualLoss

Signed-off-by: Mohammad Amanour Rahman <amanourrahman@gmail.com>
---
 e --abort | 114 ++++++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 114 insertions(+)
 create mode 100644 e --abort

diff --git a/e --abort b/e --abort
new file mode 100644
index 0000000000..08c6a46e26
--- /dev/null
+++ b/e --abort	
@@ -0,0 +1,114 @@
+bc38c962 (HEAD -> dev) Fix PerceptualLoss enum references and docstrings
+be2869df Fix network_type docstring formatting in PerceptualLoss
+ccea8930 (origin/dev, origin/HEAD) DCO Remediation Commit for Mohammad Amanour Rahman <amanourrahman@gmail.com>
+0c667a99 DCO Remediation Commit for Mohammad Amanour Rahman <amanourrahman@gmail.com>
+ea64afaf DCO Remediation Commit for Mohammad Amanour Rahman <amanourrahman@gmail.com>
+3e92d74e Fix PerceptualLoss enum references and docstrings
+84e7d704 DCO Remediation Commit for Mohammad Amanour Rahman <amanourrahman@gmail.com>
+eeef1729 DCO Remediation Commit for Mohammad Amanour Rahman <amanourrahman@gmail.com>
+cc0c951f Fix PerceptualLoss enum references and docstrings
+96ea131f DCO Remediation Commit for Mohammad Amanour Rahman <amanourrahman@gmail.com>
+e2d0a027 DCO Remediation Commit for Mohammad Amanour Rahman <amanourrahman@gmail.com>
+7ce29a1e Fix network_type docstring formatting in PerceptualLoss
+15fd428c Bump actions/checkout from 4 to 6 (#8649)
+e5417c86 Bump al-cheb/configure-pagefile-action from 1.4 to 1.5 (#8648)
+c1d02cf1 Bump peter-evans/slash-command-dispatch from 4.0.0 to 5.0.0 (#8650)
+e2677053 Added an optional_import check for onnxruntime and applied the @unitt… (#8641)
+04a89ee9 Generate heatmap transforms (#8579)
+f493ecdd 8620 modulenotfounderror no module named onnxscript in test py3x 311 pipeline (#8638)
+9a456274 Fix #8350: Clarify LocalNormalizedCrossCorrelationLoss docstring (#8639)
+865b0e70 Update documentation links (#8637)
+c968907c Fix #8599: Add track_meta and weights_only arguments to PersistentDataset for MetaTensor support. (#8628)
+806c0e84 Fix index using tuple for image cropping operation (#8633)
+23c271ea feat: add activation checkpointing to unet (#8554)
+16e469c8 Correct H&E stain ordering heuristic in ExtractHEStains (#8551)
+a8a7e575 timestep scheduling with np.linspace (#8623)
+f315bcb0 8620 ModuleNotFoundError: No module named \'onnxscript\' in test-py3x (3.11) pipeline (#8621)
+e72145ce Fix box_iou returning 0 for floating-point results less than 1. #8369 (#8553)
+579cec52 added ReduceTrait and FlattenSequence  (#8531)
+d260b785 Bump github/codeql-action from 3 to 4 (#8616)
+b10410ce Bump actions/upload-artifact from 4 to 5 (#8615)
+69444c13 Bump actions/download-artifact from 5 to 6 (#8614)
+d9cfa3e6 Bump peter-evans/create-or-update-comment from 4 to 5 (#8612)
+09ace633 Include more-itertools in build env (#8611)
+42a99477 8564 fourier positional encoding (#8570)
+69f3dd26 Bump actions/setup-python from 5 to 6 (#8589)
+c4a1acc8 Bump actions/checkout from 4 to 5 (#8588)
+8a2efcb0 Bump actions/download-artifact from 4 to 5 (#8590)
+53382d83 Update citation for 1.5.1 (#8582)
+9c6d819f Release 1.5.1 Updates (#8575)
+9122739e Removing instantiation in forward (#8580)
+cf5790db Fix gdown fails (#8576)
+cf5505a5 Diffusion Model Encoder has an output layer set in forward method and this leads to problems (#8578)
+6327a861 Transformers version (#8574)
+946cfdff Path traversal issue security fix (#8568)
+948fbb70 Torch and Pickle Safe Load Fixes (#8566)
+401ea4a0 Fix hardcoded input dim in DiffusionModelEncoder (#8514)
+fd13c1b5 Create SECURITY.md (#8546)
+725c8dea Torchvision pretrain fix (#8563)
+b5bc69d0 Classifier free guidance unconditioned value (#8562)
+0968da20 Improve Orientation transform to use the "space" (LPS vs RAS) of a metatensor by default (#8473)
+d4ba52e3 Fix build failure by pinning pyamg to versions below 5.3.0 (#8548)
+cb200af0 Tests Cleanup  (#8535)
+1e6c6615 8525 improve documentation on the datalist format (#8539)
+cf869814 fix: HistogramNormalized doc (#8543)
+cafc1feb Pytorch 2.8 Support (#8530)
+b92b2ce8 Add support for optional conditioning in PatchInferer, SliceInferer, and SlidingWindowInferer (#8400)
+2a12c4b4 Add input validation to ImageStats class (#8501)
+ede6ace8 Throw exception on invalid images in retinanet detector (#8515)
+1dc0e68c 8185 test refactor 2 (#8405)
+503b4ede fix bug in maisi vae (#8517)
+8ee3f89b Updates for Pytorch 2.7 (#8429)
+def42221 Adding .coderabbit.yaml File (#8513)
+e0be5d27 Update README badges to add research paper citations number (#8494)
+e499362b add kwargs in array and functional file (#8508)
+4b69748a ci: add custom timeout to ci job in order to save resources (#8504)
+d388d1c6 Update citation (#8484)
+3d6021a6 Fix: ZarrAvgMerger ValueError with zarr_format 3 (#8477)
+d38c93f9 Removed or Replaced Broken URLs (#8483)
+e5c512ff Fix integration test in 24.10 (#8480)
+423ea748 Fixing URLs in README.md (#8481)
+dfe6fc77 Changelog For 1.5 (#8474)
+c3a317d2 Adding CODEOWNERS (#8457)
+c3a3397d Remove unused test cases in bundle load (#8463)
+2d416557 Classifier free guidance (#8460)
+f85135b0 Remove deprecated `net_name` in test file (#8461)
+d4b4bff9 Adding Support Policy + Doc Updates (#8458)
+222d5094 Migrate to modern Python Logger API (#8449)
+bf6bc1fd Enable code coverage comments on PRs in codecov configuration (#8402)
+707b2305 Remove deprecated `return_state_dict ` in bundle `load` (#8454)
+03a0d851 Fix AutoencoderKL docstrings. (#8445)
+daf9f054 Update default overlap value in occlusion_sensitivity to 0.6 (#8446)
+f97a0e9b Remove deprecated functionality for v1.5 (#8430)
+4305bb81 :bug: fix cosine noise scheduler (#8427)
+0d19a72f  Temporarily Restrict setuptools Version to 79.0.1 (#8441)
+b58e883c selfattention block: Remove the fc linear layer if it is not used (#8325)
+f27517b8 Inverse Threading Fix (#8418)
+8f3d8e87 Update get latest bundle version function (#8420)
+eadffd24 Fix OptionalImportError: required package `openslide` is not installed (#8419)
+9586071c Add Skip test in TestTranschex (#8416)
+6c8de354 8394 Update bundle download API (#8403)
+83dcd35c Fix: correctly apply fftshift to real-valued data inputs (#8407)
+90ead4bf 8328 nnunet bundle integration (#8329)
+4986d7ff Auto3DSeg algo_template hash update (#8406)
+bfcb318b Restormer Implementation (#8312)
+8aef9a98 Update Dice Metric Docs (#8388)
+5c5ca232 Auto3DSeg algo_template hash update (#8397)
+0f5da113 Auto3DSeg algo_template hash update (#8393)
+41d6c9c2 8201 Fix DataFrame subsets indexing in CSVDataset() (#8351)
+34f37973 add prediction type for rflow scheduler (#8386)
+90de55b1 Add rectified flow noise scheduler for accelerated diffusion model (#8374)
+7c26e5af Enable Pytorch 2.6 (#8309)
+1983f277 Auto3DSeg algo_template hash update (#8378)
+2e391c82 Bump torch minimum to mitigate CVE-2024-31580 & CVE-2024-31583 and enable numpy 2 compatibility (#8368)
+a09c1f08 Update monaihosting download method (#8364)
+ab075234 Modify ControlNet inferer so that it takes in context when the diffus… (#8360)
+a7905909 8354 fix path at test onnx trt export (#8361)
+d98f3481 Solves path problem in test_bundle_trt_export.py (#8357)
+af54a17b Add Average Precision to metrics (#8089)
+b0ed2534 Fix CommonKeys docstring (#8342)
+fb8c5bf7 Removed outdated `torch` version checks from transform functions (#8359)
+960c59b4 Fix `packaging` imports in version comparison logic (#8347)
+0a85eed2 Inferer modification - save_intermediates clashes with latent shape adjustment in latent diffusion inferers (#8343)
+44add8d1 Bump min torch to 1.13.1 to mitigate CVE-2022-45907 unsafe usage of eval (#8296)
+e538f7fd Recursive Item Mapping for Nested Lists in Compose  (#8187)

From 8f9f5078f15082c3499fa00398f76d75075334d6 Mon Sep 17 00:00:00 2001
From: Mohammad Amanour Rahman <amanourrahman@gmail.com>
Date: Tue, 23 Dec 2025 00:04:10 +0600
Subject: [PATCH 13/18] WIP: temp commit before cherry-pick

Signed-off-by: Mohammad Amanour Rahman <amanourrahman@gmail.com>
---
 e --abort | 114 ------------------------------------------------------
 1 file changed, 114 deletions(-)
 delete mode 100644 e --abort

diff --git a/e --abort b/e --abort
deleted file mode 100644
index 08c6a46e26..0000000000
--- a/e --abort	
+++ /dev/null
@@ -1,114 +0,0 @@
-bc38c962 (HEAD -> dev) Fix PerceptualLoss enum references and docstrings
-be2869df Fix network_type docstring formatting in PerceptualLoss
-ccea8930 (origin/dev, origin/HEAD) DCO Remediation Commit for Mohammad Amanour Rahman <amanourrahman@gmail.com>
-0c667a99 DCO Remediation Commit for Mohammad Amanour Rahman <amanourrahman@gmail.com>
-ea64afaf DCO Remediation Commit for Mohammad Amanour Rahman <amanourrahman@gmail.com>
-3e92d74e Fix PerceptualLoss enum references and docstrings
-84e7d704 DCO Remediation Commit for Mohammad Amanour Rahman <amanourrahman@gmail.com>
-eeef1729 DCO Remediation Commit for Mohammad Amanour Rahman <amanourrahman@gmail.com>
-cc0c951f Fix PerceptualLoss enum references and docstrings
-96ea131f DCO Remediation Commit for Mohammad Amanour Rahman <amanourrahman@gmail.com>
-e2d0a027 DCO Remediation Commit for Mohammad Amanour Rahman <amanourrahman@gmail.com>
-7ce29a1e Fix network_type docstring formatting in PerceptualLoss
-15fd428c Bump actions/checkout from 4 to 6 (#8649)
-e5417c86 Bump al-cheb/configure-pagefile-action from 1.4 to 1.5 (#8648)
-c1d02cf1 Bump peter-evans/slash-command-dispatch from 4.0.0 to 5.0.0 (#8650)
-e2677053 Added an optional_import check for onnxruntime and applied the @unitt… (#8641)
-04a89ee9 Generate heatmap transforms (#8579)
-f493ecdd 8620 modulenotfounderror no module named onnxscript in test py3x 311 pipeline (#8638)
-9a456274 Fix #8350: Clarify LocalNormalizedCrossCorrelationLoss docstring (#8639)
-865b0e70 Update documentation links (#8637)
-c968907c Fix #8599: Add track_meta and weights_only arguments to PersistentDataset for MetaTensor support. (#8628)
-806c0e84 Fix index using tuple for image cropping operation (#8633)
-23c271ea feat: add activation checkpointing to unet (#8554)
-16e469c8 Correct H&E stain ordering heuristic in ExtractHEStains (#8551)
-a8a7e575 timestep scheduling with np.linspace (#8623)
-f315bcb0 8620 ModuleNotFoundError: No module named \'onnxscript\' in test-py3x (3.11) pipeline (#8621)
-e72145ce Fix box_iou returning 0 for floating-point results less than 1. #8369 (#8553)
-579cec52 added ReduceTrait and FlattenSequence  (#8531)
-d260b785 Bump github/codeql-action from 3 to 4 (#8616)
-b10410ce Bump actions/upload-artifact from 4 to 5 (#8615)
-69444c13 Bump actions/download-artifact from 5 to 6 (#8614)
-d9cfa3e6 Bump peter-evans/create-or-update-comment from 4 to 5 (#8612)
-09ace633 Include more-itertools in build env (#8611)
-42a99477 8564 fourier positional encoding (#8570)
-69f3dd26 Bump actions/setup-python from 5 to 6 (#8589)
-c4a1acc8 Bump actions/checkout from 4 to 5 (#8588)
-8a2efcb0 Bump actions/download-artifact from 4 to 5 (#8590)
-53382d83 Update citation for 1.5.1 (#8582)
-9c6d819f Release 1.5.1 Updates (#8575)
-9122739e Removing instantiation in forward (#8580)
-cf5790db Fix gdown fails (#8576)
-cf5505a5 Diffusion Model Encoder has an output layer set in forward method and this leads to problems (#8578)
-6327a861 Transformers version (#8574)
-946cfdff Path traversal issue security fix (#8568)
-948fbb70 Torch and Pickle Safe Load Fixes (#8566)
-401ea4a0 Fix hardcoded input dim in DiffusionModelEncoder (#8514)
-fd13c1b5 Create SECURITY.md (#8546)
-725c8dea Torchvision pretrain fix (#8563)
-b5bc69d0 Classifier free guidance unconditioned value (#8562)
-0968da20 Improve Orientation transform to use the "space" (LPS vs RAS) of a metatensor by default (#8473)
-d4ba52e3 Fix build failure by pinning pyamg to versions below 5.3.0 (#8548)
-cb200af0 Tests Cleanup  (#8535)
-1e6c6615 8525 improve documentation on the datalist format (#8539)
-cf869814 fix: HistogramNormalized doc (#8543)
-cafc1feb Pytorch 2.8 Support (#8530)
-b92b2ce8 Add support for optional conditioning in PatchInferer, SliceInferer, and SlidingWindowInferer (#8400)
-2a12c4b4 Add input validation to ImageStats class (#8501)
-ede6ace8 Throw exception on invalid images in retinanet detector (#8515)
-1dc0e68c 8185 test refactor 2 (#8405)
-503b4ede fix bug in maisi vae (#8517)
-8ee3f89b Updates for Pytorch 2.7 (#8429)
-def42221 Adding .coderabbit.yaml File (#8513)
-e0be5d27 Update README badges to add research paper citations number (#8494)
-e499362b add kwargs in array and functional file (#8508)
-4b69748a ci: add custom timeout to ci job in order to save resources (#8504)
-d388d1c6 Update citation (#8484)
-3d6021a6 Fix: ZarrAvgMerger ValueError with zarr_format 3 (#8477)
-d38c93f9 Removed or Replaced Broken URLs (#8483)
-e5c512ff Fix integration test in 24.10 (#8480)
-423ea748 Fixing URLs in README.md (#8481)
-dfe6fc77 Changelog For 1.5 (#8474)
-c3a317d2 Adding CODEOWNERS (#8457)
-c3a3397d Remove unused test cases in bundle load (#8463)
-2d416557 Classifier free guidance (#8460)
-f85135b0 Remove deprecated `net_name` in test file (#8461)
-d4b4bff9 Adding Support Policy + Doc Updates (#8458)
-222d5094 Migrate to modern Python Logger API (#8449)
-bf6bc1fd Enable code coverage comments on PRs in codecov configuration (#8402)
-707b2305 Remove deprecated `return_state_dict ` in bundle `load` (#8454)
-03a0d851 Fix AutoencoderKL docstrings. (#8445)
-daf9f054 Update default overlap value in occlusion_sensitivity to 0.6 (#8446)
-f97a0e9b Remove deprecated functionality for v1.5 (#8430)
-4305bb81 :bug: fix cosine noise scheduler (#8427)
-0d19a72f  Temporarily Restrict setuptools Version to 79.0.1 (#8441)
-b58e883c selfattention block: Remove the fc linear layer if it is not used (#8325)
-f27517b8 Inverse Threading Fix (#8418)
-8f3d8e87 Update get latest bundle version function (#8420)
-eadffd24 Fix OptionalImportError: required package `openslide` is not installed (#8419)
-9586071c Add Skip test in TestTranschex (#8416)
-6c8de354 8394 Update bundle download API (#8403)
-83dcd35c Fix: correctly apply fftshift to real-valued data inputs (#8407)
-90ead4bf 8328 nnunet bundle integration (#8329)
-4986d7ff Auto3DSeg algo_template hash update (#8406)
-bfcb318b Restormer Implementation (#8312)
-8aef9a98 Update Dice Metric Docs (#8388)
-5c5ca232 Auto3DSeg algo_template hash update (#8397)
-0f5da113 Auto3DSeg algo_template hash update (#8393)
-41d6c9c2 8201 Fix DataFrame subsets indexing in CSVDataset() (#8351)
-34f37973 add prediction type for rflow scheduler (#8386)
-90de55b1 Add rectified flow noise scheduler for accelerated diffusion model (#8374)
-7c26e5af Enable Pytorch 2.6 (#8309)
-1983f277 Auto3DSeg algo_template hash update (#8378)
-2e391c82 Bump torch minimum to mitigate CVE-2024-31580 & CVE-2024-31583 and enable numpy 2 compatibility (#8368)
-a09c1f08 Update monaihosting download method (#8364)
-ab075234 Modify ControlNet inferer so that it takes in context when the diffus… (#8360)
-a7905909 8354 fix path at test onnx trt export (#8361)
-d98f3481 Solves path problem in test_bundle_trt_export.py (#8357)
-af54a17b Add Average Precision to metrics (#8089)
-b0ed2534 Fix CommonKeys docstring (#8342)
-fb8c5bf7 Removed outdated `torch` version checks from transform functions (#8359)
-960c59b4 Fix `packaging` imports in version comparison logic (#8347)
-0a85eed2 Inferer modification - save_intermediates clashes with latent shape adjustment in latent diffusion inferers (#8343)
-44add8d1 Bump min torch to 1.13.1 to mitigate CVE-2022-45907 unsafe usage of eval (#8296)
-e538f7fd Recursive Item Mapping for Nested Lists in Compose  (#8187)

From 31e620ae8ceef7465106bee7a91713e1d0b92bb7 Mon Sep 17 00:00:00 2001
From: Mohammad Amanour Rahman <amanourrahman@gmail.com>
Date: Tue, 23 Dec 2025 02:04:38 +0600
Subject: [PATCH 14/18] Mohammad Amanour Rahman <amanourrahman@gmail.com> DCO
 Remediation Commit for Mohammad Amanour Rahman <amanourrahman@gmail.com>

I, Mohammad Amanour Rahman <amanourrahman@gmail.com>, hereby add my Signed-off-by to the previous commits.

Signed-off-by: Mohammad Amanour Rahman <amanourrahman@gmail.com>

From 3b7a5c09cecd6f9b6cb3524da0163798b6ceefb1 Mon Sep 17 00:00:00 2001
From: Mohammad Amanour Rahman <amanourrahman@gmail.com>
Date: Wed, 24 Dec 2025 01:12:21 +0600
Subject: [PATCH 15/18] feat: add installation hints for missing image writers
 #7980

Signed-off-by: Mohammad Amanour Rahman <amanourrahman@gmail.com>
---
 monai/data/image_writer.py | 21 ++++++++++++++++++++-
 1 file changed, 20 insertions(+), 1 deletion(-)

diff --git a/monai/data/image_writer.py b/monai/data/image_writer.py
index b9e8b9e68e..35684e1300 100644
--- a/monai/data/image_writer.py
+++ b/monai/data/image_writer.py
@@ -116,7 +116,26 @@ def resolve_writer(ext_name, error_if_not_found=True) -> Sequence:
         except Exception:  # other writer init errors indicating it exists
             avail_writers.append(_writer)
     if not avail_writers and error_if_not_found:
-        raise OptionalImportError(f"No ImageWriter backend found for {fmt}.")
+        RECOMMENDED_PACKAGES = {
+            "png": "Pillow",
+            "jpg": "Pillow",
+            "jpeg": "Pillow",
+            "nii": "nibabel or SimpleITK",
+            "nii.gz": "nibabel or SimpleITK",
+            "nrrd": "pynrrd",
+            "tif": "Pillow or tifffile",
+            "tiff": "Pillow or tifffile",
+        }
+
+        fmt_clean = fmt.replace(".", "").lower()
+        package_hint = RECOMMENDED_PACKAGES.get(fmt_clean, "")
+
+        msg = f"No ImageWriter backend found for {fmt}."
+        if package_hint:
+            msg += f" Please install '{package_hint}' (e.g., pip install {package_hint})."
+        
+        raise OptionalImportError(msg)
+
     writer_tuple = ensure_tuple(avail_writers)
     SUPPORTED_WRITERS[fmt] = writer_tuple
     return writer_tuple

From c9a472877a04437e2e112f68ec556cb8678e6361 Mon Sep 17 00:00:00 2001
From: Mohammad Amanour Rahman <amanourrahman@gmail.com>
Date: Mon, 29 Dec 2025 22:48:18 +0600
Subject: [PATCH 16/18] Fix N806: rename RECOMMENDED_PACKAGES to lowercase

Signed-off-by: Mohammad Amanour Rahman <amanourrahman@gmail.com>
---
 monai/data/image_writer.py | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/monai/data/image_writer.py b/monai/data/image_writer.py
index 35684e1300..68ace96ce6 100644
--- a/monai/data/image_writer.py
+++ b/monai/data/image_writer.py
@@ -116,7 +116,7 @@ def resolve_writer(ext_name, error_if_not_found=True) -> Sequence:
         except Exception:  # other writer init errors indicating it exists
             avail_writers.append(_writer)
     if not avail_writers and error_if_not_found:
-        RECOMMENDED_PACKAGES = {
+        recommended_packages = {
             "png": "Pillow",
             "jpg": "Pillow",
             "jpeg": "Pillow",
@@ -128,7 +128,7 @@ def resolve_writer(ext_name, error_if_not_found=True) -> Sequence:
         }
 
         fmt_clean = fmt.replace(".", "").lower()
-        package_hint = RECOMMENDED_PACKAGES.get(fmt_clean, "")
+        package_hint = recommended_packages.get(fmt_clean, "")
 
         msg = f"No ImageWriter backend found for {fmt}."
         if package_hint:

From 3d3b0cc5588a790e9436fae9b004d448853d5d7a Mon Sep 17 00:00:00 2001
From: Mohammad Amanour Rahman <amanourrahman@gmail.com>
Date: Tue, 30 Dec 2025 00:03:09 +0600
Subject: [PATCH 17/18] Fix logic: preserve dots in format extension for nii.gz
 lookup

Signed-off-by: Mohammad Amanour Rahman <amanourrahman@gmail.com>
---
 monai/data/image_writer.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/monai/data/image_writer.py b/monai/data/image_writer.py
index 68ace96ce6..0c2fae7e1e 100644
--- a/monai/data/image_writer.py
+++ b/monai/data/image_writer.py
@@ -127,7 +127,7 @@ def resolve_writer(ext_name, error_if_not_found=True) -> Sequence:
             "tiff": "Pillow or tifffile",
         }
 
-        fmt_clean = fmt.replace(".", "").lower()
+        fmt_clean = fmt.lower()
         package_hint = recommended_packages.get(fmt_clean, "")
 
         msg = f"No ImageWriter backend found for {fmt}."

From f1210bbfbeb981255f3530568bcc1b21ce28bd2d Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 29 Dec 2025 18:03:40 +0000
Subject: [PATCH 18/18] [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
---
 monai/data/image_writer.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/monai/data/image_writer.py b/monai/data/image_writer.py
index 0c2fae7e1e..1003806f4c 100644
--- a/monai/data/image_writer.py
+++ b/monai/data/image_writer.py
@@ -133,7 +133,7 @@ def resolve_writer(ext_name, error_if_not_found=True) -> Sequence:
         msg = f"No ImageWriter backend found for {fmt}."
         if package_hint:
             msg += f" Please install '{package_hint}' (e.g., pip install {package_hint})."
-        
+
         raise OptionalImportError(msg)
 
     writer_tuple = ensure_tuple(avail_writers)